PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 249aa    MW: 26724 Da    PI: 6.2797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32079607PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286.3e-091992484088
        NAM  40 ykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                 +++P  +  +++   e+e + Fs+++ ky++g+++nrat sgyWkatg 
  Han006117 199 RDLDPVVFLeNELLDCEQERFLFSTKEVKYPNGNQSNRATLSGYWKATGL 248
                45555544324444567899****************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.9707.8E-8638213IPR029061Thiamin diphosphate-binding fold
SuperFamilySSF525181.65E-6138212IPR029061Thiamin diphosphate-binding fold
PfamPF027794.9E-4439210IPR005475Transketolase-like, pyrimidine-binding domain
SMARTSM008614.2E-5440214IPR005475Transketolase-like, pyrimidine-binding domain
CDDcd070363.14E-10144210No hitNo description
PROSITE profilePS5100511.818169249IPR003441NAC domain
SuperFamilySSF1019413.01E-8198247IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLGIVRRNVG GAGGLSSQGF GRLRPVASAI RNYSSGGKEM TVRDALNSAL DEEMAADPNV  60
FVMGEEVGEY QGAYKITKGL LDKYGPERVL DTPITEAXVA GIGVGSAYHG LKPVKEFMTF  120
NFSMQAIDHV INSAAKSNYM SAGQINVPIV FRGPNGPAAG VGAQHSQCYG AWYGSVPGLK  180
VLVPYSSEDA RGLLKAAIRD LDPVVFLENE LLDCEQERFL FSTKEVKYPN GNQSNRATLS  240
GYWKATGLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ozl_D3e-803621211187Pyruvate dehydrogenase E1 component subunit b
2ozl_B3e-803621211187Pyruvate dehydrogenase E1 component subunit b
1ni4_D3e-803621211187Pyruvate dehydrogenase E1 component: Beta sub
1ni4_B3e-803621211187Pyruvate dehydrogenase E1 component: Beta sub
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.34600.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459896.11e-125PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
RefseqXP_008459895.11e-125PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
SwissprotQ387991e-119ODPB1_ARATH; Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
TrEMBLA0A103YAY41e-129A0A103YAY4_CYNCS; Uncharacterized protein
STRINGVIT_01s0146g00310.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.24e-14NAC domain containing protein 41